Prep of 1.0.0 release

Please fill in the appropriate checklist below (delete those which are not relevant). These are the most common things requested on pull requests.

PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated
• Replace dag.png with the most recent CI pipeline integrated_pe artifact
• Replace software_versions_mqc.yaml with the most recent CI pipeline generateVersions artifact
• Replace software_references_mqc.yaml with the most recent CI pipeline generateVersions artifact
• CHANGELOG.md is updated
• README.md is updated
• LICENSE.md is updated with new contributors
• Docker images moved to production release and changed in pipeline
• Docker images used in the CI unit tests match those used in pipeline

• Close issue
  Closes #87 (closed) Closes #85 (closed) Closes #91 (closed)

/cc @ghenry @venkat.malladi

changed milestone to %1.0.0

added Doing label

changed title from WIP: Preerpation of 1.0.0 release to WIP: Prep of 1.0.0 release

added 2 commits

• bef168da - Update changelog
• b8434976 - Change consistency test to be +/- 1%

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added 1 commit

• 64fc509b - Update deriva container to 1.4:1.0.0

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added 1 commit

• ac1c64c4 - Add median TIN to mRNA_QC table

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added 1 commit

• 0611f9e3 - Change tool version checker for badges to use latest tag

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marked the checklist item If you've fixed a bug or added code that should be tested, add tests! as completed

marked the checklist item Documentation in docs is updated as completed

marked the checklist item CHANGELOG.md is updated as completed

marked the checklist item README.md is updated as completed

marked the checklist item Docker images moved to production release and changed in pipeline as completed

marked the checklist item Docker images used in the CI unit tests match those used in pipeline as completed

changed the description

added 1 commit

• 0d9eca4a - Change to assertTrue for experssion.

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added 2 commits

• 8c7d30a6 - Change consistency check to 5%
• ff701587 - Update DAG and software versions

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marked the checklist item Replace dag.png with the most recent CI pipeline integrated_pe artifact as completed

marked the checklist item Replace software_versions_mqc.yaml with the most recent CI pipeline generateVersions artifact as completed

added 1 commit

• 40028645 - Update comment about authentification

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added 6 commits

• eb9e0354 - Add GUDMAP/RBK tracking to trackStart
• beb4e59b - Add status table updates with error and successful
• 18900014 - Update QC report table
• a93462f9 - Revert fail execution run
• 99d29c0d - Add execution run rid to tracking table
• f1f92c5b - Add newlines to trackStart

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added 1 commit

• e8f9080e - Update changelog

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added 1 commit

• f8c2c290 - Pass whole json file to curl for lamda into AWS qc table

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added 1 commit

• d8b16f8a - Update dag

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marked the checklist item Replace software_references_mqc.yaml with the most recent CI pipeline generateVersions artifact as completed

marked this merge request as ready

approved this merge request

assigned to @venkat.malladi and unassigned @ghenry

enabled an automatic merge when the pipeline for d8b16f8a succeeds

aborted the automatic merge because source branch was updated

added 1 commit

• 8b71fe3c - Fix execution run rid upload to tracking table

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enabled an automatic merge when the pipeline for 8b71fe3c succeeds

marked the checklist item *Close issue* as completed

marked the checklist item This comment contains a description of changes (with reason) as completed

aborted the automatic merge because source branch was updated

added 1 commit

• 0b6fa2aa - Fix date ouput for finalize execution run table

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enabled an automatic merge when the pipeline for 0b6fa2aa succeeds

aborted the automatic merge because source branch was updated

added 1 commit

• 312a6047 - Fix json uploads to tracking

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mentioned in commit 2f8e3497

merged