Commits · 3eab124a23cdbbad08b7cd7ec884d5a5d4049a35 · GUDMAP_RBK / RNA-seq · GitLab

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Mar 02, 2021
- Return echo to sif names · 3eab124a
  Gervaise Henry authored 4 years ago
  
  3eab124a
- Fix sif names · 59b4661c
  Gervaise Henry authored 4 years ago
  
  59b4661c
- Remove & from version collect · 4cbda573
  Gervaise Henry authored 4 years ago
  
  4cbda573
- Make entire version collect ci single set · d6280a4b
  Gervaise Henry authored 4 years ago
  
  d6280a4b
- Try echo sif before run · 637d98b5
  Gervaise Henry authored 4 years ago
  
  637d98b5
- Add quotes around img name · ff2f89f0
  Gervaise Henry authored 4 years ago
  
  ff2f89f0
- Put sif names together · 469ef281
  Gervaise Henry authored 4 years ago
  
  469ef281
- Temp echo sif · 27f3b44f
  Gervaise Henry authored 4 years ago
  
  27f3b44f
- Try to not error if images already there · a6b4db92
  Gervaise Henry authored 4 years ago
  
  a6b4db92
- Try to not error if images already there · c99049e9
  Gervaise Henry authored 4 years ago
  
  c99049e9
- Dynamically extract containers for cache and version extraction · 1d711568
  Gervaise Henry authored 4 years ago
  
  1d711568
- Parallelize cache singularity images · cc680428
  Gervaise Henry authored 4 years ago
  
  cc680428
- Display singularity cache · 0d01fd1c
  Gervaise Henry authored 4 years ago
  
  0d01fd1c
- Put version collection after cacheing · e697def7
  Gervaise Henry authored 4 years ago
  
  e697def7
- Fix ci lint · 49771d51
  Gervaise Henry authored 4 years ago
  
  49771d51
- Add singularity cache ci and collect version collections · 15162d84
  Gervaise Henry authored 4 years ago
  
  15162d84
- Add singularity cache to all nextflow runs · 4ada2322
  Gervaise Henry authored 4 years ago
  
  4ada2322
- Add singularity cache to start before script · 1383fb10
  Gervaise Henry authored 4 years ago
  
  1383fb10
- Add back singulity cache for each run · 0de01c80
  Gervaise Henry authored 4 years ago
  
  0de01c80
- Remove singularity cache clean · 6f1db39b
  Gervaise Henry authored 4 years ago
  
  6f1db39b
- temporarily clear singularity cache · 363b1b17
  Gervaise Henry authored 4 years ago
  
  363b1b17
- Add singularity cache to every singularity run command in ci · 5883960d
  Gervaise Henry authored 4 years ago
  
  5883960d
- Add singularity cache to before script in ci · 3cf19393
  Gervaise Henry authored 4 years ago
  
  3cf19393
- Add singularity cache to before script in ci · b53b14cf
  Gervaise Henry authored 4 years ago
  
  b53b14cf
- Try to ignore err from seqtk version extraction · 43153b59
  Gervaise Henry authored 4 years ago
  
  43153b59
- Fix seqtk version extraction · 362879d3
  Gervaise Henry authored 4 years ago
  
  362879d3
- Try and fix seqtk version collection in unit test · 5a86b737
  Gervaise Henry authored 4 years ago
  
  5a86b737
- Fix downsample ci · fcab3193
  Gervaise Henry authored 4 years ago
  
  fcab3193
- Add seqtk to references · 36caf093
  Gervaise Henry authored 4 years ago
  
  36caf093
Feb 24, 2021
- Fix nf reference in ci · 94d3aaaa
  Gervaise Henry authored 4 years ago
  
  94d3aaaa
Feb 23, 2021
- Add back mkdir -p in seqwho unit test · 6e2c01a8
  Gervaise Henry authored 4 years ago
  
  6e2c01a8
- Try removing ./ from seqwho -f in unit test · 91930b4a
  Gervaise Henry authored 4 years ago
  
  91930b4a
- Make dummy dir for plots · 6b2a74d6
  Gervaise Henry authored 4 years ago
  
  6b2a74d6
- Fix seqwho version collection in ci · 7b90b9dc
  Gervaise Henry authored 4 years ago
  
  7b90b9dc
- Use datahub as source for integration_se ci · 3ce1ddf7
  Gervaise Henry authored 4 years ago
  
  3ce1ddf7
- Fix ci lint · ba58c650
  Gervaise Henry authored 4 years ago
  
  ba58c650
- Replace species inference with seqwho · 634fd8a3
  Gervaise Henry authored 4 years ago
  
  634fd8a3
Feb 19, 2021
- Change nextflow run locations for CI to root · 0e05309f
  Gervaise Henry authored 4 years ago
  
  0e05309f
- Add test for seq type failure · 50715724
  Gervaise Henry authored 4 years ago
  
  50715724
Jan 29, 2021
- Change spike override to true/false · 04dbe532
  Gervaise Henry authored 4 years ago
  
  04dbe532