Commits · 2beb83ad227d602f68fa07692fb5b79f8a896d0c · GUDMAP_RBK / RNA-seq

Mar 14, 2020
- Fix dedupBam input of inferMeta · 2beb83ad
  Gervaise Henry authored 5 years ago
  
  2beb83ad
- Use dedupBam for inferMeta · ca8ec578
  Gervaise Henry authored 5 years ago
  
  ca8ec578
- Removed unused script · e5fdb858
  Gervaise Henry authored 5 years ago
  
  e5fdb858
- Update dag.png · cedf49d7
  Gervaise Henry authored 5 years ago
  
  cedf49d7
- Fix mkdir bdbag in ci · 68224f63
  Gervaise Henry authored 5 years ago
  
  68224f63
- Add back and update name of reference for inferMeta · e187976f
  Gervaise Henry authored 5 years ago
  
  e187976f
- Merge branch 'develop' into '35-RSeQC' · 575c554d
  Gervaise Henry authored 5 years ago
```
# Conflicts:
#   .gitlab-ci.yml
#   workflow/conf/biohpc.config
```
  575c554d
Mar 13, 2020
- Fix trim qc output · 23cfdc21
  Gervaise Henry authored 5 years ago
  
  23cfdc21
- Fix dedup qc output · 31054b21
  Gervaise Henry authored 5 years ago
  
  31054b21
- Add process log files · 1f7e1dc9
  Gervaise Henry authored 5 years ago
  
  1f7e1dc9
- Include optional inner distance histogram data output · 765e5226
  Gervaise Henry authored 5 years ago
  
  765e5226
- Update design docs · 6da4a7d1
  Gervaise Henry authored 5 years ago
  
  6da4a7d1
- Output align bam/bai to tuple, use rawBam for inference, fix failed read · 57220b3a
  Gervaise Henry authored 5 years ago
  
  57220b3a
Mar 12, 2020
- Fix sillier error in align unit ci pytest · 420cede9
  Gervaise Henry authored 5 years ago
  
  420cede9
- Fix silly error in align unit ci pytest · ac502364
  Gervaise Henry authored 5 years ago
  
  ac502364
- Fix deduped unit ci sorted bam/bai prefix · 1e50ff6e
  Gervaise Henry authored 5 years ago
  
  1e50ff6e
- Add bai test to dedup unit ci pytest · f50feedd
  Gervaise Henry authored 5 years ago
  
  f50feedd
- Fix bai in align unit ci pytest · c076037b
  Gervaise Henry authored 5 years ago
  
  c076037b
- Fix bam indexing output name to .bam.bai · 70e6fa19
  Gervaise Henry authored 5 years ago
  
  70e6fa19
- Fix tin input in unit CO · 3e7d2beb
  Gervaise Henry authored 5 years ago
  
  3e7d2beb
- Add unit test for inferMetadata · a2a809c7
  Gervaise Henry authored 5 years ago
  
  a2a809c7
- Remove R aggregation · ac21c821
  Gervaise Henry authored 5 years ago
  
  ac21c821
- Clean inference, add tin · 12996d71
  Gervaise Henry authored 5 years ago
  
  12996d71
Feb 28, 2020
- Mod some infer meta · 4a68865f
  Gervaise Henry authored 5 years ago
  
  4a68865f
Feb 18, 2020
- Update unit for getRef to use local refs · 75486483
  Gervaise Henry authored 5 years ago
  
  75486483
- Merge branch '39-dev.docs' into 'develop' · 5b436e02
  Venkat Malladi authored 5 years ago
```
Resolve "Update design docs"

Closes #39

See merge request !21
```
  5b436e02
Feb 17, 2020
- Update dag.png · 4862704a
  Gervaise Henry authored 5 years ago
  
  4862704a
- Update README.md · c6fc3b0b
  Gervaise Henry authored 5 years ago
  
  c6fc3b0b
- Update gitlab bug and merge request templates · 30fc41fb
  Gervaise Henry authored 5 years ago
  
  30fc41fb
- Make integration_pe create dag and make artifact · 0d895b2c
  Gervaise Henry authored 5 years ago
  
  0d895b2c
- Update readme with dag · d27e0c58
  Gervaise Henry authored 5 years ago
  
  d27e0c58
- Add DAG · 77749b88
  Gervaise Henry authored 5 years ago
  
  77749b88
- Use dedup for bw · 7cbce1fc
  Gervaise Henry authored 5 years ago
  
  7cbce1fc
- Remove premature rseqc references · ff70cf7f
  Gervaise Henry authored 5 years ago
  
  ff70cf7f
- Update readme · bc73cf59
  Gervaise Henry authored 5 years ago
  
  bc73cf59
- Update process table · 5e9236a3
  Gervaise Henry authored 5 years ago
  
  5e9236a3
- Update flowchart pdf · 2c0d9f11
  Gervaise Henry authored 5 years ago
  
  2c0d9f11
- Update flowchart · 6f15d988
  Gervaise Henry authored 5 years ago
  
  6f15d988
Feb 15, 2020
- Merge branch '8-makeBigWig' into 'develop' · 00144f10
  Gervaise Henry authored 5 years ago
```
Resolve "process_makeBigWig"

Closes #8

See merge request !19
```
  00144f10
Feb 14, 2020
- Add infer_experiment.py · 3c12e9c1
  Gervaise Henry authored 5 years ago
  
  3c12e9c1