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Commit fd0b7c01 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix script as input for parseMetadata

parent 41a2c611
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2 merge requests!37v0.0.1,!14Resolve "process_createManifest"
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...@@ -25,6 +25,7 @@ derivaConfig = Channel.fromPath("${baseDir}/conf/replicate_export_config.json") ...@@ -25,6 +25,7 @@ derivaConfig = Channel.fromPath("${baseDir}/conf/replicate_export_config.json")
// Define script files // Define script files
script_bdbagFetch = Channel.fromPath("${baseDir}/scripts/bdbagFetch.sh") script_bdbagFetch = Channel.fromPath("${baseDir}/scripts/bdbagFetch.sh")
script_parseMeta = Channel.fromPath("${baseDir}/scripts/parseMeta.py")
/* /*
* getData: get bagit file from consortium * getData: get bagit file from consortium
...@@ -107,6 +108,7 @@ process parseMetadata { ...@@ -107,6 +108,7 @@ process parseMetadata {
publishDir "${logsDir}", mode: 'copy', pattern: "${repRID}.parseMetadata.err" publishDir "${logsDir}", mode: 'copy', pattern: "${repRID}.parseMetadata.err"
input: input:
path pscript_arseMeta
val repRID val repRID
path fileMeta path fileMeta
path experimentSettingsMeta path experimentSettingsMeta
......
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