From fd0b7c0112e0c181162ea69d3743c598bf6856c5 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sat, 18 Jan 2020 23:30:50 -0600
Subject: [PATCH] Fix script as input for parseMetadata
---
workflow/rna-seq.nf | 2 ++
1 file changed, 2 insertions(+)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 0a03aab..61f3318 100755
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -25,6 +25,7 @@ derivaConfig = Channel.fromPath("${baseDir}/conf/replicate_export_config.json")
// Define script files
script_bdbagFetch = Channel.fromPath("${baseDir}/scripts/bdbagFetch.sh")
+script_parseMeta = Channel.fromPath("${baseDir}/scripts/parseMeta.py")
/*
* getData: get bagit file from consortium
@@ -107,6 +108,7 @@ process parseMetadata {
publishDir "${logsDir}", mode: 'copy', pattern: "${repRID}.parseMetadata.err"
input:
+ path pscript_arseMeta
val repRID
path fileMeta
path experimentSettingsMeta
--
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