diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 0a03aabea1f2e74432f7dedb191efab76e11b38f..61f33187dbc3f91ff62bff3ba2cf24c971ff812c 100755 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -25,6 +25,7 @@ derivaConfig = Channel.fromPath("${baseDir}/conf/replicate_export_config.json") // Define script files script_bdbagFetch = Channel.fromPath("${baseDir}/scripts/bdbagFetch.sh") +script_parseMeta = Channel.fromPath("${baseDir}/scripts/parseMeta.py") /* * getData: get bagit file from consortium @@ -107,6 +108,7 @@ process parseMetadata { publishDir "${logsDir}", mode: 'copy', pattern: "${repRID}.parseMetadata.err" input: + path pscript_arseMeta val repRID path fileMeta path experimentSettingsMeta