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GUDMAP_RBK
RNA-seq
Commits
76bc47cd
Commit
76bc47cd
authored
4 years ago
by
Gervaise Henry
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Harmonize process comments
parent
81a24580
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2 merge requests
!37
v0.0.1
,
!33
Resolve "process_qc"
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workflow/rna-seq.nf
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76bc47cd
...
...
@@ -280,7 +280,7 @@ fastqsTrim.into {
}
/*
* getRefInfer:
D
owloads appropriate reference for metadata inference
* getRefInfer:
d
owloads appropriate reference for metadata inference
*/
process getRefInfer {
tag "${refName}"
...
...
@@ -569,7 +569,7 @@ speciesInfer.into {
/*
* getRef:
D
owloads appropriate reference
* getRef:
d
ow
n
loads appropriate reference
*/
process getRef {
tag "${species}"
...
...
@@ -754,7 +754,7 @@ dedupBam.into {
}
/*
*
M
ake BigWig files for output
*
makeBigWig: m
ake BigWig files for output
*/
process makeBigWig {
tag "${repRID}"
...
...
@@ -780,7 +780,7 @@ process makeBigWig {
}
/*
*
Run
count
D
ata and
get the counts,
tpm
*
countData:
count
d
ata and
calculate
tpm
*/
process countData {
tag "${repRID}"
...
...
@@ -862,7 +862,7 @@ process fastqc {
}
/*
*dataQC:
run RSeQC to
calculate transcript integrity numbers (TIN)
*dataQC: calculate transcript integrity numbers (TIN)
and bin as well as calculate innerdistance of PE replicates
*/
process dataQC {
tag "${repRID}"
...
...
@@ -905,7 +905,7 @@ process dataQC {
}
/*
*aggrQC: aggregate QC from processes as wel as metadata and run MultiQC
*aggrQC: aggregate QC from processes as wel
l
as metadata and run MultiQC
*/
process aggrQC {
tag "${repRID}"
...
...
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