From 76bc47cd4d69bff30f5ebd68587b1e029745538e Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sat, 2 May 2020 17:33:58 -0500
Subject: [PATCH] Harmonize process comments
---
workflow/rna-seq.nf | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 417af3d..b62afb3 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -280,7 +280,7 @@ fastqsTrim.into {
}
/*
- * getRefInfer: Dowloads appropriate reference for metadata inference
+ * getRefInfer: dowloads appropriate reference for metadata inference
*/
process getRefInfer {
tag "${refName}"
@@ -569,7 +569,7 @@ speciesInfer.into {
/*
- * getRef: Dowloads appropriate reference
+ * getRef: downloads appropriate reference
*/
process getRef {
tag "${species}"
@@ -754,7 +754,7 @@ dedupBam.into {
}
/*
- *Make BigWig files for output
+ *makeBigWig: make BigWig files for output
*/
process makeBigWig {
tag "${repRID}"
@@ -780,7 +780,7 @@ process makeBigWig {
}
/*
- *Run countData and get the counts, tpm
+ *countData: count data and calculate tpm
*/
process countData {
tag "${repRID}"
@@ -862,7 +862,7 @@ process fastqc {
}
/*
- *dataQC: run RSeQC to calculate transcript integrity numbers (TIN)
+ *dataQC: calculate transcript integrity numbers (TIN) and bin as well as calculate innerdistance of PE replicates
*/
process dataQC {
tag "${repRID}"
@@ -905,7 +905,7 @@ process dataQC {
}
/*
- *aggrQC: aggregate QC from processes as wel as metadata and run MultiQC
+ *aggrQC: aggregate QC from processes as well as metadata and run MultiQC
*/
process aggrQC {
tag "${repRID}"
--
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