diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 417af3da72dc969bb0ccfe8ac9ff3db9509bee95..b62afb3d180bff6f476343673bb5996e3c42b8e4 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -280,7 +280,7 @@ fastqsTrim.into { } /* - * getRefInfer: Dowloads appropriate reference for metadata inference + * getRefInfer: dowloads appropriate reference for metadata inference */ process getRefInfer { tag "${refName}" @@ -569,7 +569,7 @@ speciesInfer.into { /* - * getRef: Dowloads appropriate reference + * getRef: downloads appropriate reference */ process getRef { tag "${species}" @@ -754,7 +754,7 @@ dedupBam.into { } /* - *Make BigWig files for output + *makeBigWig: make BigWig files for output */ process makeBigWig { tag "${repRID}" @@ -780,7 +780,7 @@ process makeBigWig { } /* - *Run countData and get the counts, tpm + *countData: count data and calculate tpm */ process countData { tag "${repRID}" @@ -862,7 +862,7 @@ process fastqc { } /* - *dataQC: run RSeQC to calculate transcript integrity numbers (TIN) + *dataQC: calculate transcript integrity numbers (TIN) and bin as well as calculate innerdistance of PE replicates */ process dataQC { tag "${repRID}" @@ -905,7 +905,7 @@ process dataQC { } /* - *aggrQC: aggregate QC from processes as wel as metadata and run MultiQC + *aggrQC: aggregate QC from processes as well as metadata and run MultiQC */ process aggrQC { tag "${repRID}"