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Commit 6b83cd1e authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix fail

parent b7d88e9e
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2 merge requests!58Develop,!56Resolve "Detect error in inferMetadata for tracking"
Pipeline #8809 passed with stages
in 5 minutes and 40 seconds
......@@ -2014,7 +2014,7 @@ process failExecutionRun {
then
pipelineError_details=\$(echo \${pipelineError_details}"|Species|${speciesMeta}|${speciesInfer}|\\n")
fi
#ipelineError_details=\$(echo "\${pipelineError_details::-}")
pipelineError_details=\$(echo "\${pipelineError_details::-}")
rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${pipelineError_details}" -o ${source} -c \${cookie} -u ${executionRunRID})
echo LOG: execution run RID marked as error - \${rid} >> ${repRID}.finalizeExecutionRun.log
fi
......
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