Remove italics from meta

workflow/rna-seq.nf

@@ -2000,21 +2000,21 @@ process failExecutionRun {
         endInfer="Paired End"
       else
         endInfer="unknown"
-      fipipelineError_details=\$(echo \${pipelineError_details}"|*Paired End*|"\${endMeta}"|"\${endInfer}"|\\n")
+      fipipelineError_details=\$(echo \${pipelineError_details}"|Paired End|"\${endMeta}"|"\${endInfer}"|\\n")
     fi
     if ${pipelineError_stranded}
-    then#pipelineError_details=\$(echo \${pipelineError_details}"Strandedness: submitted value = \\"${strandedMeta}\\" while inferred value = \\"${strandedInfer}\\". ")
-      pipelineError_details=\$(echo \${pipelineError_details}"|*Strandedness*|${strandedMeta}|${strandedInfer}|\\n")
+    then
+      pipelineError_details=\$(echo \${pipelineError_details}"|Strandedness|${strandedMeta}|${strandedInfer}|\\n")
     fi
     if ${pipelineError_spike}
-    then#pipelineError_details=\$(echo \${pipelineError_details}"Used_Spike_Ins: submitted value = \\"${spikeMeta}\\" while inferred value = \\"${spikeInfer}\\". ")
-      pipelineError_details=\$(echo \${pipelineError_details}"|*Used Spike Ins*|${spikeMeta}|${spikeInfer}|\\n")
+    then
+      pipelineError_details=\$(echo \${pipelineError_details}"|Used Spike Ins|${spikeMeta}|${spikeInfer}|\\n")
     fi
     if ${pipelineError_species}
-    then#pipelineError_details=\$(echo \${pipelineError_details}"Species: submitted value = \\"${speciesMeta}\\" while inferred value = \\"${speciesInfer}\\". ")
-      pipelineError_details=\$(echo \${pipelineError_details}"|*Species*|${speciesMeta}|${speciesInfer}|\\n")
+    then
+      pipelineError_details=\$(echo \${pipelineError_details}"|Species|${speciesMeta}|${speciesInfer}|\\n")
     fi
-    pipelineError_details=\$(echo "\${pipelineError_details::-2}")
+    #ipelineError_details=\$(echo "\${pipelineError_details::-}")
     rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${pipelineError_details}" -o ${source} -c \${cookie} -u ${executionRunRID})
     echo LOG: execution run RID marked as error - \${rid} >> ${repRID}.finalizeExecutionRun.log
   fi