diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 5f13a4ee25c4aa8cc4c9fba1acf26b4a7df19eb2..c1093f6959ab377e54d36c572059f03f9ff0ec42 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -2014,7 +2014,7 @@ process failExecutionRun { then pipelineError_details=\$(echo \${pipelineError_details}"|Species|${speciesMeta}|${speciesInfer}|\\n") fi - #ipelineError_details=\$(echo "\${pipelineError_details::-}") + pipelineError_details=\$(echo "\${pipelineError_details::-}") rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${pipelineError_details}" -o ${source} -c \${cookie} -u ${executionRunRID}) echo LOG: execution run RID marked as error - \${rid} >> ${repRID}.finalizeExecutionRun.log fi