From 6b83cd1e68d5948c07fa975e98645d6b5a5e7ce8 Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Mon, 4 Jan 2021 20:04:00 -0600 Subject: [PATCH] Fix fail --- workflow/rna-seq.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 5f13a4e..c1093f6 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -2014,7 +2014,7 @@ process failExecutionRun { then pipelineError_details=\$(echo \${pipelineError_details}"|Species|${speciesMeta}|${speciesInfer}|\\n") fi - #ipelineError_details=\$(echo "\${pipelineError_details::-}") + pipelineError_details=\$(echo "\${pipelineError_details::-}") rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${pipelineError_details}" -o ${source} -c \${cookie} -u ${executionRunRID}) echo LOG: execution run RID marked as error - \${rid} >> ${repRID}.finalizeExecutionRun.log fi -- GitLab