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Commit 4a52d75b authored by Gervaise Henry's avatar Gervaise Henry 🤠
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Fix newline test

parent ccda1ef6
2 merge requests!58Develop,!56Resolve "Detect error in inferMetadata for tracking"
Pipeline #8803 passed with stages
in 3 minutes and 29 seconds
...@@ -2018,7 +2018,7 @@ process failExecutionRun { ...@@ -2018,7 +2018,7 @@ process failExecutionRun {
if ${pipelineError_species} if ${pipelineError_species}
then then
#pipelineError_details=\$(echo \${pipelineError_details}"Species: submitted value = \\"${speciesMeta}\\" while inferred value = \\"${speciesInfer}\\". ") #pipelineError_details=\$(echo \${pipelineError_details}"Species: submitted value = \\"${speciesMeta}\\" while inferred value = \\"${speciesInfer}\\". ")
pipelineError_details=\$(echo \${pipelineError_details}"|*Species*|${speciesMeta}|"${speciesInfer}|\\n ") pipelineError_details=\$(echo \${pipelineError_details}"|*Species*|${speciesMeta}|${speciesInfer}|\\n ")
fi fi
#pipelineError_details=\$(echo "\${pipelineError_details::-1}") #pipelineError_details=\$(echo "\${pipelineError_details::-1}")
rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${pipelineError_details}" -o ${source} -c \${cookie} -u ${executionRunRID}) rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${pipelineError_details}" -o ${source} -c \${cookie} -u ${executionRunRID})
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