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Commit ccda1ef6 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix newline test

parent 989cad6b
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2 merge requests!58Develop,!56Resolve "Detect error in inferMetadata for tracking"
Pipeline #8802 failed with stages
in 3 minutes and 22 seconds
......@@ -2003,12 +2003,12 @@ process failExecutionRun {
endInfer="unknown"
fi
#pipelineError_details=\$(echo \${pipelineError_details}"Paired_End: submitted value = \\""\${endMeta}"\\" while inferred value = \\""\${endInfer}"\\". ")
pipelineError_details=\$(echo \${pipelineError_details}"|*Paired_End*|"\${endMeta}"|"\${endsInfer}"|\\n ")
pipelineError_details=\$(echo \${pipelineError_details}"|*Paired_End*|"\${endMeta}"|"\${endInfer}"|\\n ")
fi
if ${pipelineError_stranded}
then
#pipelineError_details=\$(echo \${pipelineError_details}"Strandedness: submitted value = \\"${strandedMeta}\\" while inferred value = \\"${strandedInfer}\\". ")
pipelineError_details=\$(echo \${pipelineError_details}"|*Strandedness*|${strandedMeta}|"${strandedInfer}|\\n ")
pipelineError_details=\$(echo \${pipelineError_details}"|*Strandedness*|${strandedMeta}|${strandedInfer}|\\n ")
fi
if ${pipelineError_spike}
then
......
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