diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 6c7b2e5666d36f3ff6e41a448a910f1bd0e43dda..68ea88b22d7e8781247a1c821758310d6b2364e9 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -2003,12 +2003,12 @@ process failExecutionRun { endInfer="unknown" fi #pipelineError_details=\$(echo \${pipelineError_details}"Paired_End: submitted value = \\""\${endMeta}"\\" while inferred value = \\""\${endInfer}"\\". ") - pipelineError_details=\$(echo \${pipelineError_details}"|*Paired_End*|"\${endMeta}"|"\${endsInfer}"|\\n ") + pipelineError_details=\$(echo \${pipelineError_details}"|*Paired_End*|"\${endMeta}"|"\${endInfer}"|\\n ") fi if ${pipelineError_stranded} then #pipelineError_details=\$(echo \${pipelineError_details}"Strandedness: submitted value = \\"${strandedMeta}\\" while inferred value = \\"${strandedInfer}\\". ") - pipelineError_details=\$(echo \${pipelineError_details}"|*Strandedness*|${strandedMeta}|"${strandedInfer}|\\n ") + pipelineError_details=\$(echo \${pipelineError_details}"|*Strandedness*|${strandedMeta}|${strandedInfer}|\\n ") fi if ${pipelineError_spike} then