From 4a52d75bcf250d903b4eb6cd98d86f035907d7cc Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 4 Jan 2021 19:22:27 -0600
Subject: [PATCH] Fix newline test

---
 workflow/rna-seq.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 68ea88b..5172c25 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -2018,7 +2018,7 @@ process failExecutionRun {
     if ${pipelineError_species}
     then
       #pipelineError_details=\$(echo \${pipelineError_details}"Species: submitted value = \\"${speciesMeta}\\" while inferred value = \\"${speciesInfer}\\". ")
-      pipelineError_details=\$(echo \${pipelineError_details}"|*Species*|${speciesMeta}|"${speciesInfer}|\\n ")
+      pipelineError_details=\$(echo \${pipelineError_details}"|*Species*|${speciesMeta}|${speciesInfer}|\\n ")
     fi
     #pipelineError_details=\$(echo "\${pipelineError_details::-1}")
     rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${pipelineError_details}" -o ${source} -c \${cookie} -u ${executionRunRID})
-- 
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