diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 68ea88b22d7e8781247a1c821758310d6b2364e9..5172c2536aa3ada895f72cb9c0578ffeea44a768 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -2018,7 +2018,7 @@ process failExecutionRun { if ${pipelineError_species} then #pipelineError_details=\$(echo \${pipelineError_details}"Species: submitted value = \\"${speciesMeta}\\" while inferred value = \\"${speciesInfer}\\". ") - pipelineError_details=\$(echo \${pipelineError_details}"|*Species*|${speciesMeta}|"${speciesInfer}|\\n ") + pipelineError_details=\$(echo \${pipelineError_details}"|*Species*|${speciesMeta}|${speciesInfer}|\\n ") fi #pipelineError_details=\$(echo "\${pipelineError_details::-1}") rid=\$(python3 ${script_uploadExecutionRun_failExecutionRun} -r ${repRID} -w \${workflow} -g \${genome} -i ${inputBagRID} -s Error -d "\${pipelineError_details}" -o ${source} -c \${cookie} -u ${executionRunRID})