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Commit 3b4f9612 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix upload output bag ci unit test

parent 13483e6b
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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
Pipeline #8473 passed with stages
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......@@ -382,7 +382,7 @@ uploadOutputBag:
cookie=$(cat credential.json | grep -A 1 '\"dev.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') &&
cookie=${cookie:11:-1} &&
loc=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org put ./test.txt /hatrac/resources/rnaseq/pipeline/output_bag/TEST/test.txt) &&
rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadOutputBag.py -e -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o dev.gudmap.org -c ${cookie}) &&
rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadOutputBag.py -e 18-MJ3C -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o dev.gudmap.org -c ${cookie}) &&
echo ${rid} test output bag created
else
rid=$(echo ${exist} | grep -o '\"RID\":\".*\",\"RCT') &&
......
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