Fix upload output bag ci unit test

.gitlab-ci.yml

@@ -303,7 +303,7 @@ uploadInputBag:
       cookie=$(cat credential.json | grep -A 1 '\"dev.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') &&
       cookie=${cookie:11:-1} &&
       loc=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org put ./test.txt /hatrac/resources/rnaseq/pipeline/input_bag/TEST/test.txt) &&
-      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadInputBag.py -f test.txt -l ${loc} -s ${md5} -b ${size} -o dev.gudmap.org -c ${cookie}) &&
+      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadInputBag.py -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test input bag' -o dev.gudmap.org -c ${cookie}) &&
       echo ${rid} test input bag created
     else
       rid=$(echo ${exist} | grep -o '\"RID\":\".*\",\"RCT') &&
@@ -325,12 +325,12 @@ uploadExecutionRun:
     cookie=$(cat credential.json | grep -A 1 '\"dev.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') &&
     cookie=${cookie:11:-1} &&
     if [ "${exist}" == "[]" ]; then
-      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadExecutionRun.py -r 18-MJ3A -w 18-DT5T -g 17-BPD4 -i 18-MHWC -s Error -d 'Run in process' -o dev.gudmap.org -c ${cookie} -u F) &&
+      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadExecutionRun.py -r 18-MJ3A -w 18-DT5T -g 17-BPD4 -i 18-MHWC -s Success -d 'This is a test execution run' -o dev.gudmap.org -c ${cookie} -u F) &&
       echo ${rid} test execution run created
     else
       rid=$(echo ${exist} | grep -o '\"RID\":\".*\",\"RCT') &&
       rid=${rid:7:-6} &&
-      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadExecutionRun.py -r 18-MJ3A -w 18-DT5T -g 17-BPD4 -i 18-MHWC -s Error -d 'Run in process' -o dev.gudmap.org -c ${cookie} -u ${rid}) &&
+      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadExecutionRun.py -r 18-MJ3A -w 18-DT5T -g 17-BPD4 -i 18-MHWC -s Success -d 'This is a test execution run' -o dev.gudmap.org -c ${cookie} -u ${rid}) &&
       echo ${rid} test execution run already exists
     fi
 
@@ -348,12 +348,12 @@ uploadQC:
     cookie=$(cat credential.json | grep -A 1 '\"dev.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') &&
     cookie=${cookie:11:-1} &&
     if [ "${exist}" == "[]" ]; then
-      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 18-MJ3A -e 18-MJ3C -p "Single Read" -s forward -l 35 -w 5 -f 1 -o dev.gudmap.org -c ${cookie} -u F) &&
+      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 18-MJ3A -e 18-MJ3C -p "Single Read" -s forward -l 35 -w 5 -f 1 -n 'This is a test mRNA QC' -o dev.gudmap.org -c ${cookie} -u F) &&
       echo ${rid} test execution run created
     else
       rid=$(echo ${exist} | grep -o '\"RID\":\".*\",\"RCT') &&
       rid=${rid:7:-6} &&
-      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 18-MJ3A -e 18-MJ3C -p "Single Read" -s forward -l 35 -w 5 -f 1 -o dev.gudmap.org -c ${cookie} -u ${rid}) &&
+      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadQC.py -r 18-MJ3A -e 18-MJ3C -p "Single Read" -s forward -l 35 -w 5 -f 1 -n 'This is a test mRNA QC' -o dev.gudmap.org -c ${cookie} -u ${rid}) &&
       echo ${rid} test execution run already exists
     fi
 
@@ -382,7 +382,7 @@ uploadOutputBag:
       cookie=$(cat credential.json | grep -A 1 '\"dev.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') &&
       cookie=${cookie:11:-1} &&
       loc=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org put ./test.txt /hatrac/resources/rnaseq/pipeline/output_bag/TEST/test.txt) &&
-      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadOutputBag.py -f test.txt -l ${loc} -s ${md5} -b ${size} -o dev.gudmap.org -c ${cookie}) &&
+      rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadOutputBag.py -e -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o dev.gudmap.org -c ${cookie}) &&
       echo ${rid} test output bag created
     else
       rid=$(echo ${exist} | grep -o '\"RID\":\".*\",\"RCT') &&