From 3b4f961253b5ed4de163c9b1c19f7b5bf67d849d Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 7 Dec 2020 10:33:05 -0600
Subject: [PATCH] Fix upload output bag ci unit test
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 2bf89a8..582177f 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -382,7 +382,7 @@ uploadOutputBag:
cookie=$(cat credential.json | grep -A 1 '\"dev.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') &&
cookie=${cookie:11:-1} &&
loc=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org put ./test.txt /hatrac/resources/rnaseq/pipeline/output_bag/TEST/test.txt) &&
- rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadOutputBag.py -e -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o dev.gudmap.org -c ${cookie}) &&
+ rid=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/uploadOutputBag.py -e 18-MJ3C -f test.txt -l ${loc} -s ${md5} -b ${size} -n 'This is a test output bag' -o dev.gudmap.org -c ${cookie}) &&
echo ${rid} test output bag created
else
rid=$(echo ${exist} | grep -o '\"RID\":\".*\",\"RCT') &&
--
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