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This repository contains scripts for ChIP-seq and RNA-seq analysis used in ARF paper

The general gene expression analysis pipeline of 10X Visium data

De novo circular RNA detection from circular viral genome

Encapsulates the migration of data from genomeseer database, integration of Clarity data and visualization via a web application

Journal Club for foundational machine learning topics

BFei's student group project placenta segmentator

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.

Transcript Analyzer is a module that aids in looking at and identifying target phrases in transcripts. There are two main files ProbTimeSeries.py and TranscriptAnalyzer.py the latter of which uses Streamlit to create an app

3 month training notes/walkthrough of excersises

This is a project to show an example CI pipeline.

This is a test repo