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Data analysis pipeline for preprocessing and reconstruction of data acquired on the iThera MSOT InVision 256-TF imaging device.
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This project contains all code used in our preprint, bioarxiv.org/content/10.1101/2020.06.04.134494v1
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Parameter exploration job runner for the BioHPC nucleus cluster.
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Implementations of the Kalata filters described in D.S. O'Kelly, Y. Guo, R.P. Mason. Evaluating online filtering algorithms to enhance dynamic multispectral optoacoustic tomography, Photoacoustics (2020)
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Contains various scripts used for all data analysis in Bacon_et_al_Mol_Cell_2020.
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Parameter exploration job runner for the BioHPC nucleus cluster.
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Ember.js sbatch script generator. Front-end only.
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Quick and dirty singularity bootstrap definitions for all biocontainers.
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An example workflow package for the BioHPC Astrocyte workflow engine.
