GitLab

Three variants of regression models based on deep neural networks, random forest, and gradient boosting to predict chromatin interaction strength.

This repository contains scripts for ChIP-seq and RNA-seq analysis used in ARF paper

3 month training notes/walkthrough of excersises

R code for subsample correlation analysis as used in Thody et al. 2022.

cutandrun pipeline from https://github.com/nf-core/cutandrun

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

The runner for cutandrun

This project houses code from the Meeks Lab and TIBIR Whole Brain Microscopy Facility that facilitates image registration and analysis

An example workflow package for the BioHPC Astrocyte workflow engine.