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An Astrocyte workflow to clean single cell or single nucleus RNA data of technical artifacts using the tool CellBender.

An Astrocyte workflow to run cellranger count on droplet-based single cell RNA data generated by 10x Genomics.

This repository contains scripts for ChIP-seq and RNA-seq analysis used in ARF paper

This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.

Image-based Profiling Template

Using R & Python, this R Shiny application was developed to visualize and interact with high-throughput data

An example workflow package for the BioHPC Astrocyte workflow engine.

An example workflow package for the BioHPC Astrocyte workflow engine.