Explore projects

Tools for processing droplet microfluidics data in R.

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.

Encapsulates the migration of data from genomeseer database, integration of Clarity data and visualization via a web application

Phillips replacement

Move Flywheel data to box.com

An Astrocyte workflow to run cellranger count on droplet-based single cell RNA data generated by 10x Genomics.

AI segmentation for axial T2W MR Autosomal Dominant Polycystic Kidney Disease (https://github.com/aksg87/adpkd-segmentation-pytorch)

An Astrocyte workflow to clean single cell or single nucleus RNA data of technical artifacts using the tool CellBender.

This is the conversion of the BICF RNASeq pipeline into the nextflow framework.

An example workflow package for the BioHPC Astrocyte workflow engine.