Explore projects

This repository contains scripts for ChIP-seq and RNA-seq analysis used in ARF paper

This is a test repo

A repository for code to replicate the analysis of single cell data from female human urethra.

FLywheel Gearification of https://gitlab.com/Michael_Paris/AutoMATiCA/

code for interchangeability by Nancy Obuchowski

BFei's student group project placenta segmentator

The general gene expression analysis pipeline of 10X Visium data

Files from the Advanced Concepts of Deep Learning Nanocourse

Transcript Analyzer is a module that aids in looking at and identifying target phrases in transcripts. There are two main files ProbTimeSeries.py and TranscriptAnalyzer.py the latter of which uses Streamlit to create an app

Source codes to perform simulations of microtubule growth. McCormick and Cleary et al. 2023 (in preparation), "Interface-acting nucleotide controls polymerization dynamics at microtubule plus- and minus-ends".

Gearification of Sybil Lung Cancer Risk Prediction (https://github.com/reginabarzilaygroup/Sybil)

Move Flywheel data to box.com

An Astrocyte workflow to run cellranger count on droplet-based single cell RNA data generated by 10x Genomics.

AI segmentation for axial T2W MR Autosomal Dominant Polycystic Kidney Disease (https://github.com/aksg87/adpkd-segmentation-pytorch)