Explore projects

This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.

Created by Cooper Mellema in Dr. Montillo's Deep Learning Lab University of Texas Southwestern Medical Center Lyda Hill Dept. of Bioinformatics Project centered around using different causal measures to infer Effective connectivity and DL properties

Prototype of a web page that can search through a list of genes from user input and return the associated symbols.

Can search by synonyms and symbols.

PySlurm with fixes on the 16.05.5 branch to allow use with Python 3.6+

Tools for processing droplet microfluidics data in R.

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.

Encapsulates the migration of data from genomeseer database, integration of Clarity data and visualization via a web application

Implementations of the Kalata filters described in D.S. O'Kelly, Y. Guo, R.P. Mason. Evaluating online filtering algorithms to enhance dynamic multispectral optoacoustic tomography, Photoacoustics (2020)