Explore projects

Program that overlays MEG dipoles onto MRI images and provides region highlighting to show where the dipoles are located.

cutandrun pipeline from https://github.com/nf-core/cutandrun

code for interchangeability by Nancy Obuchowski

Three variants of regression models based on deep neural networks, random forest, and gradient boosting to predict chromatin interaction strength.

Analysis scripts for projects related to germ cell tumors.

A list of R packages/libraries required to run pipelines.

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

Generate flow-rate gradients with Fluigent microfluidic pumps.

Multiple Fisher's exact tests for differential alternative splicing detection using RNA-seq data

An example workflow package for the BioHPC Astrocyte workflow engine.

Prototype of a web page that can search through a list of genes from user input and return the associated symbols.

Can search by synonyms and symbols.

Instructions to login into BioHPC and adding SSH key to GitHub profile

Contains various scripts used for all data analysis in Bacon_et_al_Mol_Cell_2020.

Parameter exploration job runner for the BioHPC nucleus cluster.

DeBias decouples global bias from direct interactions in co-orientation and co-localization data.