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code for interchangeability by Nancy Obuchowski

Analysis scripts for projects related to germ cell tumors.

Three variants of regression models based on deep neural networks, random forest, and gradient boosting to predict chromatin interaction strength.

A list of R packages/libraries required to run pipelines.

Generate flow-rate gradients with Fluigent microfluidic pumps.

Multiple Fisher's exact tests for differential alternative splicing detection using RNA-seq data

An example workflow package for the BioHPC Astrocyte workflow engine.

An Astrocyte workflow to clean single cell or single nucleus RNA data of technical artifacts using the tool CellBender.

Instructions to login into BioHPC and adding SSH key to GitHub profile

Contains various scripts used for all data analysis in Bacon_et_al_Mol_Cell_2020.

Parameter exploration job runner for the BioHPC nucleus cluster.

DeBias decouples global bias from direct interactions in co-orientation and co-localization data.

An example workflow package for the BioHPC Astrocyte workflow engine.

FLywheel Gearification of https://gitlab.com/Michael_Paris/AutoMATiCA/