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Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

cutandrun pipeline from https://github.com/nf-core/cutandrun

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

additional steps are necessary to build HON within UTSW due to proxy and firewalls

Analysis scripts for projects related to germ cell tumors.

Generate flow-rate gradients with Fluigent microfluidic pumps.

This repository contains scripts for ChIP-seq and RNA-seq analysis used in ARF paper

This is a test repo

A repository for code to replicate the analysis of single cell data from female human urethra.

FLywheel Gearification of https://gitlab.com/Michael_Paris/AutoMATiCA/

code for interchangeability by Nancy Obuchowski

BFei's student group project placenta segmentator

The general gene expression analysis pipeline of 10X Visium data

Files from the Advanced Concepts of Deep Learning Nanocourse

Transcript Analyzer is a module that aids in looking at and identifying target phrases in transcripts. There are two main files ProbTimeSeries.py and TranscriptAnalyzer.py the latter of which uses Streamlit to create an app