Commits · master · Strand Lab / sc-TissueMapper_Pr

Dec 04, 2018
- Revert R version to fixed stable version: 3.4.1-gccmkl · dab5ccad
  Gervaise Henry authored 6 years ago
  
  dab5ccad
Nov 03, 2018
- Fix output folders for StressCompare and add to Pd.sh · 696ac6fb
  Gervaise Henry authored 6 years ago
  
  696ac6fb
Nov 02, 2018
- Revert to high RAM nodes and new R/3.4.1 · 6dad81ef
  Gervaise Henry authored 6 years ago
  
  6dad81ef
- Revert to stable old R/3.4.1 · 71d62d0f
  Gervaise Henry authored 6 years ago
  
  71d62d0f
- Allow DS bash scripts to use any node · 4d30cda6
  Gervaise Henry authored 6 years ago
  
  4d30cda6
- Use rebuilt R/3.4.1 · ed753d6e
  Gervaise Henry authored 6 years ago
  
  ed753d6e
- Update bash scripts, link data and use new R/3.4.1 · 5cb8b844
  Gervaise Henry authored 6 years ago
  
  5cb8b844
Oct 04, 2018
- Remove 384GB node · acbcd567
  Gervaise Henry authored 6 years ago
  
  acbcd567
- Remove 128GB node · bfc1c788
  Gervaise Henry authored 6 years ago
  
  bfc1c788
- Allow DS.D17 bash script to be sbatch'ed to 128BG node also · 86d0f7b9
  Gervaise Henry authored 6 years ago
  
  86d0f7b9
Oct 03, 2018
- Add bash script to run r script · 1e6e3905
  Gervaise Henry authored 6 years ago
  
  1e6e3905
Sep 28, 2018
- Add R & bash scripts for D27_FACS · e2ef9276
  Gervaise Henry authored 6 years ago
  
  e2ef9276
- Add bash script to run D17_FACS · 361eae03
  Gervaise Henry authored 6 years ago
  
  361eae03
Aug 31, 2018
- Fix Pd bash.script name · 3365f4b0
  Gervaise Henry authored 6 years ago
  
  3365f4b0
- Add bash.script to run Pd workflow · c9108026
  Gervaise Henry authored 6 years ago
  
  c9108026
- Remove depreciated D17 and D17+D27 bash.scripts · c9e3a9bb
  Gervaise Henry authored 6 years ago
  
  c9e3a9bb
Aug 06, 2018
- Remove develop scripts · 64aaa55e
  Gervaise Henry authored 6 years ago
  
  64aaa55e
Jul 13, 2018
- Separate bash.scripts for 2 and 3 patient aggreagations · 9588554a
  Gervaise Henry authored 6 years ago
  
  9588554a
Jul 08, 2018
- Add secondary analysis to DPr bash script · fc999941
  Gervaise Henry authored 6 years ago
  
  fc999941
- Remove depreciated bash scripts · fad1aca5
  Gervaise Henry authored 6 years ago
  
  fad1aca5
Jun 20, 2018
- Add D27 funchtion sh · 1518c1ea
  Gervaise Henry authored 6 years ago
  
  1518c1ea
Jun 18, 2018
- Add bash scripts for runnting TissueMapper and fix r.scripts to allow the... · 2673f2f8
  Gervaise Henry authored 6 years ago
```
Add bash scripts for runnting TissueMapper and fix r.scripts to allow the pipeline to run from bash script folder
```
  2673f2f8
May 31, 2018
- Add DIY script for CCA aggregation of D17 and D27 and increase resolution of downstream analysis · a03c163c
  Gervaise Henry authored 6 years ago
  
  a03c163c
May 20, 2018
- Add D27 bash script · b8336818
  Gervaise Henry authored 6 years ago
  
  b8336818
May 19, 2018
- Tweak var.genes/PC/resolution selection · 7c97ee65
  Gervaise Henry authored 6 years ago
  
  7c97ee65
May 16, 2018
- Add custom var.gene and %mito cutoffs and PC choices · 81f06892
  Gervaise Henry authored 6 years ago
  
  81f06892
May 13, 2018
- Update D17 bash script · 96eee387
  Gervaise Henry authored 6 years ago
  
  96eee387
May 09, 2018
- Update bash script FullAnalysis for D17PrF to do higher res analysis · 7b811154
  Gervaise Henry authored 6 years ago
  
  7b811154
Apr 30, 2018
- Fix patition name for sc_FullAnalysis-D17PrF.sh · 58e8a049
  Gervaise Henry authored 6 years ago
  
  58e8a049
Apr 29, 2018
- Add back Cell Cycle analysis to default FullAnalysis sh · e4e48987
  Gervaise Henry authored 6 years ago
  
  e4e48987
- Add FullAnalysis sh with all defaults · 0d104d4d
  Gervaise Henry authored 6 years ago
  
  0d104d4d
- Update FullAnalyis sh from Pr to D17PrF · 21f4f870
  Gervaise Henry authored 6 years ago
  
  21f4f870
Apr 25, 2018
- Downsample data for QuSaGE before converting to dataframe to handle large datasets · b76082ea
  Gervaise Henry authored 6 years ago
  
  b76082ea
Apr 20, 2018
- Upgrade to R/3.4.1 · 91f3a49e
  Gervaise Henry authored 6 years ago
  
  91f3a49e
Apr 19, 2018
- Add 128GB and 384GB partitions as option for FullAnalysis bash scripts, also... · 04269b42
  Gervaise Henry authored 6 years ago
```
Add 128GB and 384GB partitions as option for FullAnalysis bash scripts, also clean up all bash scripts
```
  04269b42
Apr 03, 2018
- Run sc_FullAnalysis-Pr.sh on both 256GB and 256GBv1 partitions · 6b6fc6c9
  Gervaise Henry authored 7 years ago
  
  6b6fc6c9
Mar 30, 2018
- Add code to create and analize Continual Integreation test data · 112f3c32
  Gervaise Henry authored 7 years ago
  
  112f3c32
Mar 29, 2018
- Generalize sc_LinkData.sh to handle any dataset by project (dir) name · 6a30b150
  Gervaise Henry authored 7 years ago
  
  6a30b150
Mar 28, 2018
- Add bash script to link 10x data to correct location (Pr data) · 2496a6ed
  Gervaise Henry authored 7 years ago
  
  2496a6ed
Mar 26, 2018
- Add missing sc_MergeSubClust.R to bash.script · 874de560
  Gervaise Henry authored 7 years ago
  
  874de560