Add 128GB and 384GB partitions as option for FullAnalysis bash scripts, also...

Add 128GB and 384GB partitions as option for FullAnalysis bash scripts, also clean up all bash scripts

bash.scripts/sc_CIAnalysis-Pr.sh

 #!/bin/bash
-#
-# CREATED USING THE BIOHPC PORTAL on Thu Nov 30 2017 16:16:26 GMT-0600 (Central Standard Time)
-#
-# This file is batch script used to run commands on the BioHPC cluster.
-# The script is submitted to the cluster using the SLURM `sbatch` command.
-# Lines starting with # are comments, and will not be run.
-# Lines starting with #SBATCH specify options for the scheduler.
-# Lines that do not start with # or #SBATCH are commands that will run.
-
-# Name for the job that will be visible in the job queue and accounting tools.
 #SBATCH --job-name R_CIAnalysis
-
-# Name of the SLURM partition that this job should run on.
-#SBATCH -p super       # partition (queue)
-# Number of nodes required to run this job
+#SBATCH -p super
 #SBATCH -N 1
-
-# Time limit for the job in the format Days-H:M:S
-# A job that reaches its time limit will be cancelled.
-# Specify an accurate time limit for efficient scheduling so your job runs promptly.
-#SBATCH -t 7-0:0:0
-
-# The standard output and errors from commands will be written to these files.
-# %j in the filename will be replace with the job number when it is submitted.
+#SBATCH -t 0-1:0:0
 #SBATCH -o job_%j.out
-#SBATCH -e job_%j.err
-
-# Send an email when the job status changes, to the specfied address.
+#SBATCH -e job_%j.out
 #SBATCH --mail-type ALL
 #SBATCH --mail-user gervaise.henry@utsouthwestern.edu
 
 module load R/3.3.2-gccmkl
 
-# COMMAND GROUP 1
 Rscript ../r.scripts/sc_Demultiplex.R
 Rscript ../r.scritps/sc_D-SampleReorder.R
 Rscript ../r.scripts/sc_Seurat.Score.CellCycle.R
@@ -47,4 +24,3 @@ Rscript ../r.scripts/sc_MergeSubClust.R --r=0.2
 Rscript ../r.scripts/sc_PC.Score.NE.R --sv=NA
 Rscript ../r.scripts/sc_DEG.R
 Rscript ../r.scripts/sc_Tables.R
-# END OF SCRIPT

bash.scripts/sc_FullAnalysis-Pr.sh

 #!/bin/bash
-#
-# CREATED USING THE BIOHPC PORTAL on Thu Nov 30 2017 16:16:26 GMT-0600 (Central Standard Time)
-#
-# This file is batch script used to run commands on the BioHPC cluster.
-# The script is submitted to the cluster using the SLURM `sbatch` command.
-# Lines starting with # are comments, and will not be run.
-# Lines starting with #SBATCH specify options for the scheduler.
-# Lines that do not start with # or #SBATCH are commands that will run.
-
-# Name for the job that will be visible in the job queue and accounting tools.
 #SBATCH --job-name R_FullAnalysis
-
-# Name of the SLURM partition that this job should run on.
-#SBATCH -p 256GB,256GBv1       # partition (queue)
-# Number of nodes required to run this job
+#SBATCH -p 128B,256GB,256GBv1,384GB
 #SBATCH -N 1
-
-# Time limit for the job in the format Days-H:M:S
-# A job that reaches its time limit will be cancelled.
-# Specify an accurate time limit for efficient scheduling so your job runs promptly.
 #SBATCH -t 7-0:0:0
-
-# The standard output and errors from commands will be written to these files.
-# %j in the filename will be replace with the job number when it is submitted.
 #SBATCH -o job_%j.out
-#SBATCH -e job_%j.err
-
-# Send an email when the job status changes, to the specfied address.
+#SBATCH -e job_%j.out
 #SBATCH --mail-type ALL
 #SBATCH --mail-user gervaise.henry@utsouthwestern.edu
 
 module load R/3.3.2-gccmkl
 
-# COMMAND GROUP 1
 Rscript ../r.scripts/sc_Demultiplex.R
 Rscript ../r.scritps/sc_D-SampleReorder.R
 Rscript ../r.scripts/sc_Seurat.Score.CellCycle.R
@@ -47,4 +24,3 @@ Rscript ../r.scripts/sc_MergeSubClust.R
 Rscript ../r.scripts/sc_PC.Score.NE.R
 Rscript ../r.scripts/sc_DEG.R
 Rscript ../r.scripts/sc_Tables.R
-# END OF SCRIPT