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Commit 0d104d4d authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add FullAnalysis sh with all defaults

parent f0fd7e61
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#!/bin/bash
#SBATCH --job-name R_FullAnalysis
#SBATCH -p 128B,256GB,256GBv1,384GB
#SBATCH -N 1
#SBATCH -t 7-0:0:0
#SBATCH -o job_%j.out
#SBATCH -e job_%j.out
#SBATCH --mail-type ALL
#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
module load R/3.4.1-gccmkl
Rscript ../r.scripts/sc_Demultiplex.R
Rscript ../r.scripts/sc_QC.R
Rscript ../r.scripts/sc_Cluster.R
Rscript ../r.scripts/sc_PC.Score.Stress.R
Rscript ../r.scripts/sc_QuSAGE.Lineage.R
Rscript ../r.scripts/sc_LineageSubClust.R
Rscript ../r.scripts/sc_QuSAGE_EpiSubClust.R
Rscript ../r.scripts/sc_QuSAGE_StSubClust.R
Rscript ../r.scripts/sc_MergeSubClust.R
Rscript ../r.scripts/sc_PC.Score.NE.R
Rscript ../r.scripts/sc_DEG.R
Rscript ../r.scripts/sc_Tables.R
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