diff --git a/bash.scripts/sc_FullAnalysis.sh b/bash.scripts/sc_FullAnalysis.sh new file mode 100755 index 0000000000000000000000000000000000000000..235b1bbce7c77cc2dd8fa32efa0d87b42cc30db7 --- /dev/null +++ b/bash.scripts/sc_FullAnalysis.sh @@ -0,0 +1,24 @@ +#!/bin/bash +#SBATCH --job-name R_FullAnalysis +#SBATCH -p 128B,256GB,256GBv1,384GB +#SBATCH -N 1 +#SBATCH -t 7-0:0:0 +#SBATCH -o job_%j.out +#SBATCH -e job_%j.out +#SBATCH --mail-type ALL +#SBATCH --mail-user gervaise.henry@utsouthwestern.edu + +module load R/3.4.1-gccmkl + +Rscript ../r.scripts/sc_Demultiplex.R +Rscript ../r.scripts/sc_QC.R +Rscript ../r.scripts/sc_Cluster.R +Rscript ../r.scripts/sc_PC.Score.Stress.R +Rscript ../r.scripts/sc_QuSAGE.Lineage.R +Rscript ../r.scripts/sc_LineageSubClust.R +Rscript ../r.scripts/sc_QuSAGE_EpiSubClust.R +Rscript ../r.scripts/sc_QuSAGE_StSubClust.R +Rscript ../r.scripts/sc_MergeSubClust.R +Rscript ../r.scripts/sc_PC.Score.NE.R +Rscript ../r.scripts/sc_DEG.R +Rscript ../r.scripts/sc_Tables.R