From 0d104d4d95503e5a2ac56c614a04573a208cfb7e Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 29 Apr 2018 16:01:06 -0500
Subject: [PATCH] Add FullAnalysis sh with all defaults

---
 bash.scripts/sc_FullAnalysis.sh | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)
 create mode 100755 bash.scripts/sc_FullAnalysis.sh

diff --git a/bash.scripts/sc_FullAnalysis.sh b/bash.scripts/sc_FullAnalysis.sh
new file mode 100755
index 0000000..235b1bb
--- /dev/null
+++ b/bash.scripts/sc_FullAnalysis.sh
@@ -0,0 +1,24 @@
+#!/bin/bash
+#SBATCH --job-name R_FullAnalysis
+#SBATCH -p 128B,256GB,256GBv1,384GB
+#SBATCH -N 1
+#SBATCH -t 7-0:0:0
+#SBATCH -o job_%j.out
+#SBATCH -e job_%j.out
+#SBATCH --mail-type ALL
+#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
+
+module load R/3.4.1-gccmkl
+
+Rscript ../r.scripts/sc_Demultiplex.R
+Rscript ../r.scripts/sc_QC.R
+Rscript ../r.scripts/sc_Cluster.R
+Rscript ../r.scripts/sc_PC.Score.Stress.R
+Rscript ../r.scripts/sc_QuSAGE.Lineage.R
+Rscript ../r.scripts/sc_LineageSubClust.R
+Rscript ../r.scripts/sc_QuSAGE_EpiSubClust.R
+Rscript ../r.scripts/sc_QuSAGE_StSubClust.R
+Rscript ../r.scripts/sc_MergeSubClust.R
+Rscript ../r.scripts/sc_PC.Score.NE.R
+Rscript ../r.scripts/sc_DEG.R
+Rscript ../r.scripts/sc_Tables.R
-- 
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