Commits · ee0828f0b15d6977719c95b7b0b5610c2a7a2b97 · BICF / Astrocyte / chipseq_analysis

Mar 09, 2019
- Update tests and add a skip test that only runs on branches. · ee0828f0
  Venkat Malladi authored 6 years ago
  
  ee0828f0
- Add in skipping of diffBind and motif search. · aa5566a2
  Venkat Malladi authored 6 years ago
  
  aa5566a2
- Only run certain tests on branches vs master. · d9919554
  Venkat Malladi authored 6 years ago
  
  d9919554
- Fix diff peaks output for single end. · 5f6dd111
  Venkat Malladi authored 6 years ago
  
  5f6dd111
Mar 08, 2019
- Fix test output. · 6f79eba4
  Venkat Malladi authored 6 years ago
  
  6f79eba4
Mar 07, 2019
- Remove extra bwa command. · b095c05f
  Venkat Malladi authored 6 years ago
  
  b095c05f
- Fix rename. · 276dac3b
  Venkat Malladi authored 6 years ago
  
  276dac3b
Feb 05, 2019
- Pin versions with corrected syntax. · 55a605d1
  Venkat Malladi authored 6 years ago
  
  55a605d1
- Pin versions.; · e193b1a1
  Venkat Malladi authored 6 years ago
  
  e193b1a1
- Update items to install. · f3cfaa92
  Venkat Malladi authored 6 years ago
  
  f3cfaa92
- Add in correct shuffle step. · 29868d56
  Venkat Malladi authored 6 years ago
  
  29868d56
- Fix output directory. #28 . · 81054b5c
  Venkat Malladi authored 6 years ago
  
  81054b5c
- Update where test files are coming from. · 4bf3f4ac
  Venkat Malladi authored 6 years ago
  
  4bf3f4ac
- Update git ignore. · 280550d3
  Venkat Malladi authored 6 years ago
  
  280550d3
- Update tests and merge. · 8991d010
  Venkat Malladi authored 6 years ago
  
  8991d010
Jan 31, 2019
- Merge branch '27_pdfs_plots' into 'master' · 4a653c8f
  Venkat Malladi authored 6 years ago
```
27 pdfs plots

See merge request !19
```
  4a653c8f
Jan 25, 2019
- edited png to pdf · 419a82ca
  Holly Ruess authored 6 years ago
  
  419a82ca
Jan 22, 2019
- change png to pdf · 4a069abf
  Holly Ruess authored 6 years ago
  
  4a069abf
Jan 19, 2019
- Fix the missing parathesis. · e6955b5c
  Venkat Malladi authored 6 years ago
  
  e6955b5c
- Fix test output. · 511f55b0
  Venkat Malladi authored 6 years ago
  
  511f55b0
Jan 18, 2019
- add Pearson Correlation, make plots pdf · e78c5af1
  Holly Ruess authored 6 years ago
  
  e78c5af1
Jan 15, 2019
- Split tests to make more readable. · 0bd2c988
  Venkat Malladi authored 6 years ago
  
  0bd2c988
- Modify tests. · 89340f9c
  Venkat Malladi authored 6 years ago
  
  89340f9c
Jan 14, 2019
- Fix output directories and file names. · 21aac926
  Venkat Malladi authored 6 years ago
  
  21aac926
- Fix Trim reads output to match. · 483dd61f
  Venkat Malladi authored 6 years ago
  
  483dd61f
- Update tests and output file names. · 2b651306
  Venkat Malladi authored 6 years ago
  
  2b651306
Jan 13, 2019
- Update file name output. · 4aa91a5c
  Venkat Malladi authored 6 years ago
  
  4aa91a5c
- Add return back to xcor. · ba769bcc
  Venkat Malladi authored 6 years ago
  
  ba769bcc
- Make file names consistent. · f6de14de
  Venkat Malladi authored 6 years ago
  
  f6de14de
- Fix narrowpeak file name. · 21dcae96
  Venkat Malladi authored 6 years ago
  
  21dcae96
Jan 12, 2019
- Add back index. · 32642c70
  Venkat Malladi authored 6 years ago
  
  32642c70
- Fix filter reads output. · 1c1e036e
  Venkat Malladi authored 6 years ago
  
  1c1e036e
Jan 11, 2019
- Fix cod syntax. · b47a158e
  Venkat Malladi authored 6 years ago
  
  b47a158e
- Fix variable name. · bb9b42c8
  Venkat Malladi authored 6 years ago
  
  bb9b42c8
- Fix array rename. · d3003427
  Venkat Malladi authored 6 years ago
  
  d3003427
- Fix trim reads input. · fac677c3
  Venkat Malladi authored 6 years ago
  
  fac677c3
- Change to ifelse. · bf2be6c1
  Venkat Malladi authored 6 years ago
  
  bf2be6c1
- Change diffbind peaks. · d68be9e2
  Venkat Malladi authored 6 years ago
  
  d68be9e2
- Merge branch 'master' into 23-rename_output · a8753bd3
  Venkat Malladi authored 6 years ago
  
  a8753bd3
- Merge branch '15_Annotation_diff_bind' into 'master' · 21f00e65
  Venkat Malladi authored 6 years ago
```
Resolve "Add in current chip-analysis functionality."

Closes #15

See merge request !18
```
  21f00e65