Commits · c1c8d3a0c09d61157a0afcb0542701ff1e8d65cd · BICF / Astrocyte / chipseq_analysis

Jul 19, 2019
- fix biohpc.config typos and add gtf location to astrocyte params · c1c8d3a0
  Jeremy Mathews authored 5 years ago
  
  c1c8d3a0
Jul 12, 2019
- Add Plot Profile. Add python version to multiqc. · d41309dc
  Jeremy Mathews authored 5 years ago
  
  d41309dc
Apr 21, 2019
- Add in multiqc reports. · a7cb17d8
  Venkat Malladi authored 5 years ago
  
  a7cb17d8
Mar 14, 2019
- Add in phantompeak in config. · a2571d3b
  Venkat Malladi authored 6 years ago
  
  a2571d3b
- Update byte output and conf. · 562c52bc
  Venkat Malladi authored 6 years ago
  
  562c52bc
Mar 12, 2019
- Fix config. · af60bbd5
  Venkat Malladi authored 6 years ago
  
  af60bbd5
- Generate software report. · 9d650a71
  Venkat Malladi authored 6 years ago
  
  9d650a71
Mar 08, 2019
- Add in software version parsing. · ff9999f2
  Venkat Malladi authored 6 years ago
  
  ff9999f2
Jan 09, 2019
- Update configuration. · 96069f62
  Venkat Malladi authored 6 years ago
  
  96069f62
Dec 26, 2018
- Update script name, R version and end result. · 6f6aa9d5
  Venkat Malladi authored 6 years ago
  
  6f6aa9d5
- Change R version and output. · e7b72cfb
  Venkat Malladi authored 6 years ago
  
  e7b72cfb
Dec 16, 2018
- Update motif search scripts to meet new python standards · e2f0afca
  Venkat Malladi authored 6 years ago
  
  e2f0afca
Aug 14, 2018
- Change to new conventions. · 035156b7
  Venkat Malladi authored 6 years ago
  
  035156b7
Jul 26, 2018
- updated all processes to use samtools/1.6 · 98315769
  Jonathan Gesell authored 6 years ago
  
  98315769
Jul 25, 2018
- add in motif search. · 5198436d
  Venkat Malladi authored 6 years ago
  
  5198436d
Jul 24, 2018
- Add in differntial binding peaks. · 7b67dda5
  Venkat Malladi authored 6 years ago
  
  7b67dda5
- Update annotation script. · 7deea97e
  Venkat Malladi authored 6 years ago
  
  7deea97e
Jun 29, 2018
- Update biohpc.config to deal with queue · a52d2a8c
  Venkat Malladi authored 6 years ago
  
  publish_0.0.13
  
  a52d2a8c
Jun 25, 2018
- Expire in 2 days. · 3a5fbf2c
  Venkat Malladi authored 6 years ago
  
  3a5fbf2c
Mar 16, 2018
- Update config to use executor instead of cpu in config file. · 55c0d935
  Venkat Malladi authored 7 years ago
  
  55c0d935
Mar 15, 2018
- Fix error in config not quoted varaible · 912cae35
  Venkat Malladi authored 7 years ago
  
  912cae35
- Remove config · 707b9e36
  Venkat Malladi authored 7 years ago
  
  707b9e36
- Fix config. · 928b56da
  Venkat Malladi authored 7 years ago
  
  928b56da
- Update nextflow version and reports. · a32a7b3a
  Venkat Malladi authored 7 years ago
  
  a32a7b3a
Nov 29, 2017
- Fix order of loading phantompeakqualtools. · 07d73df9
  Venkat Malladi authored 7 years ago
  
  07d73df9
Nov 16, 2017
- Fix config file. · 088309a4
  Venkat Malladi authored 7 years ago
  
  088309a4
- Add in naive overlap peaks. · a2609dc8
  Venkat Malladi authored 7 years ago
  
  a2609dc8
Nov 15, 2017
- Fix syntax. · 45277ef8
  Venkat Malladi authored 7 years ago
  
  45277ef8
- Change to local executor. · 0d5907c2
  Venkat Malladi authored 7 years ago
  
  0d5907c2
Nov 14, 2017
- Add in call peaks step and configurations. · 96e6d832
  Venkat Malladi authored 7 years ago
  
  96e6d832
Oct 27, 2017
- Make process not local. · 3b05c7c2
  Venkat Malladi authored 7 years ago
  
  3b05c7c2
- Add in pooling and psuedoreplicate scripts and tests. · 32e90024
  Venkat Malladi authored 7 years ago
  
  32e90024
Oct 25, 2017
- Add in making experiment design files. · 3d6faead
  Venkat Malladi authored 7 years ago
  
  3d6faead
Oct 23, 2017
- Add in xcor step and qc values. · b5d90522
  Venkat Malladi authored 7 years ago
  
  b5d90522
Oct 22, 2017
- update config to not have local step. · b801983f
  Venkat Malladi authored 7 years ago
  
  b801983f
- Convert bam to tagAlign. · 4c00f7ea
  Venkat Malladi authored 7 years ago
  
  4c00f7ea
Oct 20, 2017
- Fix syntax of process name. · bdf276ec
  Venkat Malladi authored 7 years ago
  
  bdf276ec
Oct 17, 2017
- Add in deeptools code to generate QC from deeptools. · 4e68354e
  Venkat Malladi authored 7 years ago
  
  4e68354e
Oct 10, 2017
- Update samtools version and synxtax to fix bugs in last push. · 2948ddca
  Venkat Malladi authored 7 years ago
  
  2948ddca
Oct 09, 2017
- Add in steps to remove dups and filter reads. · 3a9a868b
  Venkat Malladi authored 7 years ago
  
  3a9a868b