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chipseq_analysis
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BICF
Astrocyte
chipseq_analysis
Commits
3a5fbf2c
There was a problem fetching the pipeline stages.
Commit
3a5fbf2c
authored
6 years ago
by
Venkat Malladi
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parent
55c0d935
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Pipeline
#2038
failed with stages
in 29 minutes and 30 seconds
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.gitlab-ci.yml
+5
-1
5 additions, 1 deletion
.gitlab-ci.yml
workflow/conf/biohpc.config
+1
-1
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workflow/conf/biohpc.config
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2 deletions
.gitlab-ci.yml
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−
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View file @
3a5fbf2c
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@@ -19,8 +19,12 @@ single_end_mouse:
-
nextflow run workflow/main.nf
-
pytest -m integration
-
pytest --cov=./workflow/scripts
artifacts
:
expire_in
:
2 days
paired_end_human
:
stage
:
integration
script
:
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38'
-
nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd
true
artifacts
:
expire_in
:
2 days
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workflow/conf/biohpc.config
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3a5fbf2c
process
{
executor
=
'slurm'
queue
=
'super'
queue
=
'super'
//
Process
specific
configuration
$
checkDesignFile
{
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