diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 5c3cefdeca3907c797ba9776141126be2085a191..79370bd0eda7a5926ba2c01514fbceb9941f944d 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -19,8 +19,12 @@ single_end_mouse: - nextflow run workflow/main.nf - pytest -m integration - pytest --cov=./workflow/scripts + artifacts: + expire_in: 2 days paired_end_human: stage: integration script: - - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' + - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true + artifacts: + expire_in: 2 days diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config index 74388811bd5117ed7d8bd6d963882990fee5cd29..647927efa383ced7c7bcf0eed33482f6df562091 100644 --- a/workflow/conf/biohpc.config +++ b/workflow/conf/biohpc.config @@ -1,6 +1,6 @@ process { executor = 'slurm' - queue='super' + queue = 'super' // Process specific configuration $checkDesignFile {