From 3a5fbf2ca3db02e12250008775767cfbf62ca4cf Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 25 Jun 2018 16:14:10 -0500
Subject: [PATCH] Expire in 2 days.
---
.gitlab-ci.yml | 6 +++++-
workflow/conf/biohpc.config | 2 +-
2 files changed, 6 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 5c3cefd..79370bd 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -19,8 +19,12 @@ single_end_mouse:
- nextflow run workflow/main.nf
- pytest -m integration
- pytest --cov=./workflow/scripts
+ artifacts:
+ expire_in: 2 days
paired_end_human:
stage: integration
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38'
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true
+ artifacts:
+ expire_in: 2 days
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 7438881..647927e 100644
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -1,6 +1,6 @@
process {
executor = 'slurm'
- queue='super'
+ queue = 'super'
// Process specific configuration
$checkDesignFile {
--
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