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Commit 3a5fbf2c authored by Venkat Malladi's avatar Venkat Malladi
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Expire in 2 days.

parent 55c0d935
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Pipeline #2038 failed with stages
in 29 minutes and 30 seconds
...@@ -19,8 +19,12 @@ single_end_mouse: ...@@ -19,8 +19,12 @@ single_end_mouse:
- nextflow run workflow/main.nf - nextflow run workflow/main.nf
- pytest -m integration - pytest -m integration
- pytest --cov=./workflow/scripts - pytest --cov=./workflow/scripts
artifacts:
expire_in: 2 days
paired_end_human: paired_end_human:
stage: integration stage: integration
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true
artifacts:
expire_in: 2 days
process { process {
executor = 'slurm' executor = 'slurm'
queue='super' queue = 'super'
// Process specific configuration // Process specific configuration
$checkDesignFile { $checkDesignFile {
......
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