Add in deeptools code to generate QC from deeptools. (4e68354e) · Commits · BICF / Astrocyte / chipseq_analysis · GitLab

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chipseq_analysis
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4e68354e

There was a problem fetching the pipeline stages.

Commit 4e68354e authored 7 years ago by

Venkat Malladi

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Add in deeptools code to generate QC from deeptools.

parent 471773a6

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1 merge request!8Resolve "Update deeptools"

Pipeline #1072 failed with stage

in 15 seconds

Changes 8
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astrocyte_pkg.yml 1 addition, 0 deletions

astrocyte_pkg.yml
test_data/design_ENCSR238SGC_SE.txt 4 additions, 4 deletions

test_data/design_ENCSR238SGC_SE.txt
test_data/design_ENCSR729LGA_PE.txt 4 additions, 4 deletions

test_data/design_ENCSR729LGA_PE.txt
workflow/conf/biohpc.config 4 additions, 0 deletions

workflow/conf/biohpc.config
workflow/main.nf 25 additions, 0 deletions

workflow/main.nf
workflow/scripts/experiment_qc.py 170 additions, 74 deletions

workflow/scripts/experiment_qc.py
workflow/tests/test_experiment_qc.py 42 additions, 0 deletions

workflow/tests/test_experiment_qc.py
workflow/tests/test_utils.py 1 addition, 1 deletion

workflow/tests/test_utils.py

with 251 additions and 83 deletions

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