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Commit 471773a6 authored by Venkat Malladi's avatar Venkat Malladi
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Update name of params.

parent a1fdbeab
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1 merge request!8Resolve "Update deeptools"
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workflow/scripts/map_qc.py
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...@@ -154,7 +154,7 @@ def dedup_mapped(bam, bam_basename, paired): ...@@ -154,7 +154,7 @@ def dedup_mapped(bam, bam_basename, paired):
# Markduplicates # Markduplicates
dup_file_qc_filename = bam_basename + ".dup.qc" dup_file_qc_filename = bam_basename + ".dup.qc"
tmp_dup_mark_filename = bam_basename + ".dupmark.bam" tmp_dup_mark_filename = bam_basename + ".dupmark.bam"
sambamba_parms = "--hash-table-size=17592186044416" + \ sambamba_params = "--hash-table-size=17592186044416" + \
" --overflow-list-size=20000000 --io-buffer-size=256" " --overflow-list-size=20000000 --io-buffer-size=256"
with open(dup_file_qc_filename, 'w') as fh: with open(dup_file_qc_filename, 'w') as fh:
sambamba_markdup_command = ( sambamba_markdup_command = (
......
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