From 471773a6775749084f39e03c9f91883a012ea491 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 17 Oct 2017 11:29:42 -0500
Subject: [PATCH] Update name of params.
---
workflow/scripts/{runDeepTools.py => experiment_qc.py} | 0
workflow/scripts/map_qc.py | 2 +-
2 files changed, 1 insertion(+), 1 deletion(-)
rename workflow/scripts/{runDeepTools.py => experiment_qc.py} (100%)
diff --git a/workflow/scripts/runDeepTools.py b/workflow/scripts/experiment_qc.py
similarity index 100%
rename from workflow/scripts/runDeepTools.py
rename to workflow/scripts/experiment_qc.py
diff --git a/workflow/scripts/map_qc.py b/workflow/scripts/map_qc.py
index f44b6e4..db9973c 100644
--- a/workflow/scripts/map_qc.py
+++ b/workflow/scripts/map_qc.py
@@ -154,7 +154,7 @@ def dedup_mapped(bam, bam_basename, paired):
# Markduplicates
dup_file_qc_filename = bam_basename + ".dup.qc"
tmp_dup_mark_filename = bam_basename + ".dupmark.bam"
- sambamba_parms = "--hash-table-size=17592186044416" + \
+ sambamba_params = "--hash-table-size=17592186044416" + \
" --overflow-list-size=20000000 --io-buffer-size=256"
with open(dup_file_qc_filename, 'w') as fh:
sambamba_markdup_command = (
--
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