Commits · c1c8d3a0c09d61157a0afcb0542701ff1e8d65cd · BICF / Astrocyte / chipseq_analysis

Jul 19, 2019
- fix biohpc.config typos and add gtf location to astrocyte params · c1c8d3a0
  Jeremy Mathews authored 5 years ago
  
  c1c8d3a0
Jul 18, 2019
- PR Checklist · 437126b7
  Jeremy Mathews authored 5 years ago
  
  437126b7
Jul 16, 2019
- Fix output from plot profile. · c9b7cbad
  Jeremy Mathews authored 5 years ago
  
  c9b7cbad
Jul 15, 2019
- add plot profile test. output to experiment QC folder · a5928f13
  Jeremy Mathews authored 5 years ago
  
  a5928f13
- Add outputs to plot profile · 69aa7720
  Jeremy Mathews authored 5 years ago
  
  69aa7720
Jul 12, 2019
- Add Plot Profile. Add python version to multiqc. · d41309dc
  Jeremy Mathews authored 5 years ago
  
  d41309dc
Jul 10, 2019
- Update indentation error · 2d5cbb2e
  Jeremy Mathews authored 5 years ago
  
  2d5cbb2e
Jul 09, 2019
- Update gitignore with nextflow and update software reference test · 567ee0eb
  Jeremy Mathews authored 5 years ago
  
  567ee0eb
Jul 03, 2019
- fix indentation error · 408b01d5
  Holly Ruess authored 5 years ago
  
  408b01d5
Jul 02, 2019
- fix issue 58 single rep · 63669d43
  Holly Ruess authored 5 years ago
  
  63669d43
May 30, 2019
- Error Check Update Path Name for paired-end · ebede896
  Jeremy Mathews authored 5 years ago
  
  ebede896
May 29, 2019
- Error Check Update path name · 44edba97
  Jeremy Mathews authored 5 years ago
  
  44edba97
May 28, 2019
- 56-Error check in test_motif_search.py for non empty fa file · b127caa6
  Jeremy Mathews authored 5 years ago
  
  b127caa6
- Comment Licensing in R scripts · cb87ab30
  Jeremy Mathews authored 5 years ago
  
  cb87ab30
May 24, 2019
- 56-part a-Remove .txt from reference fasta file · 965d0dd5
  Jeremy Mathews authored 5 years ago
  
  965d0dd5
- 55-Fail Pipeline if wrong genome is selected · 730a2da3
  Jeremy Mathews authored 5 years ago
  
  730a2da3
May 17, 2019
- Update tests to pass. · b8fbc47f
  Venkat Malladi authored 5 years ago
  
  b8fbc47f
- Add license for scripts. · 151ac16b
  Venkat Malladi authored 5 years ago
  
  151ac16b
- Add license to main.nf. · 8037f1ec
  Venkat Malladi authored 5 years ago
  
  8037f1ec
- Add in License. · 9a1711cf
  Venkat Malladi authored 5 years ago
  
  9a1711cf
- Add in logo for BICF. · 0a27c272
  Venkat Malladi authored 5 years ago
  
  0a27c272
May 16, 2019
- Fix parsing of analysis. · d16229c2
  Venkat Malladi authored 5 years ago
  
  d16229c2
- Make test more generic. · 051d31fa
  Venkat Malladi authored 5 years ago
  
  051d31fa
May 14, 2019
- Make test data more generic. · 062733a0
  Venkat Malladi authored 5 years ago
  
  062733a0
- Add in python3 for motif serach. · 2c56b9c7
  Venkat Malladi authored 5 years ago
  
  2c56b9c7
- updated script pool_and_psuedoreplicates · f3bffff1
  Holly Ruess authored 5 years ago
  
  f3bffff1
May 06, 2019
- Covert back to files. · b18ced81
  Venkat Malladi authored 5 years ago
  
  b18ced81
- Fix association of file path. · cd167def
  Venkat Malladi authored 5 years ago
  
  cd167def
- Update main.nf to have file path for main.nf. · 9c53690d
  Venkat Malladi authored 5 years ago
  
  9c53690d
- Update diff peaks. · aa328cd4
  Venkat Malladi authored 5 years ago
  
  aa328cd4
May 02, 2019
- Updated changes suggested by Spencer and fix pipeline error. · 41fcff0b
  Venkat Malladi authored 5 years ago
  
  41fcff0b
Apr 23, 2019
- Fix test peak number. · 4dbedfbd
  Venkat Malladi authored 5 years ago
  
  4dbedfbd
- Fix test file error and missing modules. · 3065da66
  Venkat Malladi authored 5 years ago
  
  3065da66
Apr 22, 2019
- Update tests. · 38e33deb
  Venkat Malladi authored 5 years ago
  
  38e33deb
- Update regular variables. · 38d03ac0
  Venkat Malladi authored 5 years ago
  
  38d03ac0
- update astrocyte to use true false. · 61a87202
  Venkat Malladi authored 5 years ago
  
  61a87202
- Fix variable assignment. · b4a86fab
  Venkat Malladi authored 5 years ago
  
  b4a86fab
- Move single-end to run on astrocyte. · 3cf06f92
  Venkat Malladi authored 5 years ago
  
  3cf06f92
Apr 21, 2019
- Direct ouput correctly. · dafd3bc8
  Venkat Malladi authored 5 years ago
  
  dafd3bc8
- Revert changes. · d13047f0
  Venkat Malladi authored 5 years ago
  
  d13047f0