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Commit 2d5cbb2e authored by Jeremy Mathews's avatar Jeremy Mathews
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Update indentation error

parent 408b01d5
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1 merge request!55Resolve "add plotProfile"
Pipeline #4301 passed with stages
in 17 hours, 47 minutes, and 8 seconds
......@@ -332,25 +332,25 @@ def main():
path_to_pool_control = cwd + '/' + pool_control
design_new_df['control_tag_align'] = path_to_pool_control
# Add in pseudo replicates
tmp_metadata = design_new_df.loc[0].copy()
tmp_metadata['control_tag_align'] = path_to_pool_control
for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
tmp_metadata['sample_id'] = experiment_id + '_pr' + str(rep)
tmp_metadata['replicate'] = str(rep) + '_pr'
tmp_metadata['xcor'] = 'Calculate'
path_to_file = cwd + '/' + pseudorep_file
tmp_metadata['tag_align'] = path_to_file
design_new_df = design_new_df.append(tmp_metadata)
# Add in pool experiment
tmp_metadata['sample_id'] = experiment_id + '_pooled'
tmp_metadata['replicate'] = 'pooled'
# Add in pseudo replicates
tmp_metadata = design_new_df.loc[0].copy()
tmp_metadata['control_tag_align'] = path_to_pool_control
for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
tmp_metadata['sample_id'] = experiment_id + '_pr' + str(rep)
tmp_metadata['replicate'] = str(rep) + '_pr'
tmp_metadata['xcor'] = 'Calculate'
path_to_file = cwd + '/' + pool_experiment_se
path_to_file = cwd + '/' + pseudorep_file
tmp_metadata['tag_align'] = path_to_file
design_new_df = design_new_df.append(tmp_metadata)
# Add in pool experiment
tmp_metadata['sample_id'] = experiment_id + '_pooled'
tmp_metadata['replicate'] = 'pooled'
tmp_metadata['xcor'] = 'Calculate'
path_to_file = cwd + '/' + pool_experiment_se
tmp_metadata['tag_align'] = path_to_file
design_new_df = design_new_df.append(tmp_metadata)
# Write out new dataframe
design_new_df.to_csv(experiment_id + '_ppr.tsv',
header=True, sep='\t', index=False)
......
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