From 2d5cbb2ef23304409ab8daa4f50cd57c3449e97d Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Wed, 10 Jul 2019 09:23:33 -0500
Subject: [PATCH] Update indentation error
---
workflow/scripts/pool_and_psuedoreplicate.py | 30 ++++++++++----------
1 file changed, 15 insertions(+), 15 deletions(-)
diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index 4618965..07eac44 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -332,25 +332,25 @@ def main():
path_to_pool_control = cwd + '/' + pool_control
design_new_df['control_tag_align'] = path_to_pool_control
- # Add in pseudo replicates
- tmp_metadata = design_new_df.loc[0].copy()
- tmp_metadata['control_tag_align'] = path_to_pool_control
- for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
- tmp_metadata['sample_id'] = experiment_id + '_pr' + str(rep)
- tmp_metadata['replicate'] = str(rep) + '_pr'
- tmp_metadata['xcor'] = 'Calculate'
- path_to_file = cwd + '/' + pseudorep_file
- tmp_metadata['tag_align'] = path_to_file
- design_new_df = design_new_df.append(tmp_metadata)
-
- # Add in pool experiment
- tmp_metadata['sample_id'] = experiment_id + '_pooled'
- tmp_metadata['replicate'] = 'pooled'
+ # Add in pseudo replicates
+ tmp_metadata = design_new_df.loc[0].copy()
+ tmp_metadata['control_tag_align'] = path_to_pool_control
+ for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
+ tmp_metadata['sample_id'] = experiment_id + '_pr' + str(rep)
+ tmp_metadata['replicate'] = str(rep) + '_pr'
tmp_metadata['xcor'] = 'Calculate'
- path_to_file = cwd + '/' + pool_experiment_se
+ path_to_file = cwd + '/' + pseudorep_file
tmp_metadata['tag_align'] = path_to_file
design_new_df = design_new_df.append(tmp_metadata)
+ # Add in pool experiment
+ tmp_metadata['sample_id'] = experiment_id + '_pooled'
+ tmp_metadata['replicate'] = 'pooled'
+ tmp_metadata['xcor'] = 'Calculate'
+ path_to_file = cwd + '/' + pool_experiment_se
+ tmp_metadata['tag_align'] = path_to_file
+ design_new_df = design_new_df.append(tmp_metadata)
+
# Write out new dataframe
design_new_df.to_csv(experiment_id + '_ppr.tsv',
header=True, sep='\t', index=False)
--
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