diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index 4618965655accf94aa150610cb1d656f07b9ba15..07eac44c67414a043a3a33bd1c1ccc4a86eb9a87 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -332,25 +332,25 @@ def main():
         path_to_pool_control = cwd + '/' +  pool_control
         design_new_df['control_tag_align'] = path_to_pool_control
 
-        # Add in pseudo replicates
-        tmp_metadata = design_new_df.loc[0].copy()
-        tmp_metadata['control_tag_align'] = path_to_pool_control
-        for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
-            tmp_metadata['sample_id'] = experiment_id + '_pr' + str(rep)
-            tmp_metadata['replicate'] = str(rep) + '_pr'
-            tmp_metadata['xcor'] = 'Calculate'
-            path_to_file = cwd + '/' + pseudorep_file
-            tmp_metadata['tag_align'] = path_to_file
-            design_new_df = design_new_df.append(tmp_metadata)
-
-        # Add in pool experiment
-        tmp_metadata['sample_id'] = experiment_id + '_pooled'
-        tmp_metadata['replicate'] = 'pooled'
+    # Add in pseudo replicates
+    tmp_metadata = design_new_df.loc[0].copy()
+    tmp_metadata['control_tag_align'] = path_to_pool_control
+    for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
+        tmp_metadata['sample_id'] = experiment_id + '_pr' + str(rep)
+        tmp_metadata['replicate'] = str(rep) + '_pr'
         tmp_metadata['xcor'] = 'Calculate'
-        path_to_file = cwd + '/' + pool_experiment_se
+        path_to_file = cwd + '/' + pseudorep_file
         tmp_metadata['tag_align'] = path_to_file
         design_new_df = design_new_df.append(tmp_metadata)
 
+    # Add in pool experiment
+    tmp_metadata['sample_id'] = experiment_id + '_pooled'
+    tmp_metadata['replicate'] = 'pooled'
+    tmp_metadata['xcor'] = 'Calculate'
+    path_to_file = cwd + '/' + pool_experiment_se
+    tmp_metadata['tag_align'] = path_to_file
+    design_new_df = design_new_df.append(tmp_metadata)
+
     # Write out new dataframe
     design_new_df.to_csv(experiment_id + '_ppr.tsv',
                          header=True, sep='\t', index=False)