Commits · 0307bd09e2730bd424a5c03912e1b565268a3cfa · BICF / Astrocyte / chipseq_analysis

Mar 24, 2020
- Fix option parsing. · 0307bd09
  Venkat Malladi authored 5 years ago
  
  0307bd09
Mar 23, 2020
- Fix spacing. · 807f5ec0
  Venkat Malladi authored 5 years ago
  
  807f5ec0
- Test that size is greater than 0. · e952181e
  Venkat Malladi authored 5 years ago
  
  e952181e
- Check if file exists and not empty. · 7df1a370
  Venkat Malladi authored 5 years ago
  
  7df1a370
- Update file paths. · f76f9efd
  Venkat Malladi authored 5 years ago
  
  f76f9efd
Mar 21, 2020
- Add usage statement. · 8fba6bd9
  Venkat Malladi authored 5 years ago
  
  8fba6bd9
- Update documentation and use GTF file. · d9e3b2b4
  Venkat Malladi authored 5 years ago
  
  d9e3b2b4
Mar 20, 2020
- Remove redundant test. · f6951a42
  Venkat Malladi authored 5 years ago
  
  f6951a42
- Unit test other functions. · a79a5aac
  Venkat Malladi authored 5 years ago
  
  a79a5aac
Mar 19, 2020
- Add new parrallel unit test. · bc3cbdee
  Venkat Malladi authored 5 years ago
  
  bc3cbdee
- testing using bats. · 96612335
  Venkat Malladi authored 5 years ago
  
  96612335
Feb 29, 2020
- Update for bats testing. · 5ca30c98
  Venkat Malladi authored 5 years ago
  
  5ca30c98
Feb 16, 2020
- Update path · b2a2fa7a
  Venkat Malladi authored 5 years ago
  
  b2a2fa7a
Feb 15, 2020
- Fix path for multiqc. · 05ae565f
  Venkat Malladi authored 5 years ago
  
  05ae565f
- update reference. · 51142e4a
  Venkat Malladi authored 5 years ago
  
  51142e4a
Feb 12, 2020
- Update plot profile name. · 08867511
  Venkat Malladi authored 5 years ago
  
  08867511
- Changed singularity container to allow for rendering of references. · 7a76914b
  Venkat Malladi authored 5 years ago
  
  7a76914b
- Update software version test python. · 8b57e672
  Venkat Malladi authored 5 years ago
  
  8b57e672
- Solve the minimum fragment length to be at least 50bp or through an error. · c84c66cc
  Venkat Malladi authored 5 years ago
  
  c84c66cc
Sep 16, 2019
- Update paired-end diff to skip this test. · 49615e08
  Venkat Malladi authored 5 years ago
  
  49615e08
Sep 03, 2019
- Update cross correlation and related tests · a0a02958
  Jeremy Mathews authored 5 years ago
  
  a0a02958
Aug 16, 2019
- add -p option for plot profile · 1cd03ed1
  Jeremy Mathews authored 5 years ago
  
  1cd03ed1
- Update tests · 43a96c42
  Jeremy Mathews authored 5 years ago
  
  43a96c42
Aug 14, 2019
- Make Multiqc using singularity · 92ed4283
  Jeremy Mathews authored 5 years ago
  
  92ed4283
- Update tests for xcor change · ef9a113d
  Jeremy Mathews authored 5 years ago
  
  ef9a113d
Aug 08, 2019
- Fix biohpc.config · ebaa8534
  Jeremy Mathews authored 5 years ago
  
  ebaa8534
Aug 06, 2019
- Fix and test use of GTF and Genename params · 5e5202b0
  Jeremy Mathews authored 5 years ago
  
  5e5202b0
Aug 01, 2019
- Fix PE annotate peaks assertion in pytest · d716364d
  Jeremy Mathews authored 5 years ago
  
  d716364d
Jul 31, 2019
- Change Annotate Peaks to GTF file reference · b880088c
  Jeremy Mathews authored 5 years ago
  
  b880088c
Jul 26, 2019
- Final Revision: Remove If-Else Statement (Redundant) · a9bfa737
  Jeremy Mathews authored 5 years ago
  
  a9bfa737
Jul 25, 2019
- make df from dict · 596e145d
  Jeremy Mathews authored 5 years ago
  
  596e145d
- new run · c412f90f
  Jeremy Mathews authored 5 years ago
  
  c412f90f
- fix spacing again · e4e239be
  Jeremy Mathews authored 5 years ago
  
  e4e239be
- fix spacing · 254ac382
  Jeremy Mathews authored 5 years ago
  
  254ac382
- redo dict call · 266c57a7
  Jeremy Mathews authored 5 years ago
  
  266c57a7
- redo · cecc9ac6
  Jeremy Mathews authored 5 years ago
  
  cecc9ac6
- change design_df · 57872294
  Jeremy Mathews authored 5 years ago
  
  57872294
- print error · d21683d4
  Jeremy Mathews authored 5 years ago
  
  d21683d4
- Re order pool and pseudoreplicates · e6c55f50
  Jeremy Mathews authored 5 years ago
  
  e6c55f50
Jul 24, 2019
- update reference genome to gtf · 1dd9f5e4
  Jeremy Mathews authored 5 years ago
  
  1dd9f5e4