Skip to content
Snippets Groups Projects
Commit cecc9ac6 authored by Jeremy Mathews's avatar Jeremy Mathews
Browse files

redo

parent 57872294
Branches
Tags
1 merge request!54Resolve "Single control or experiment fails at call peaks macs"
Pipeline #4528 failed with stages
in 14 seconds
......@@ -209,7 +209,7 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
# Duplicate rows and update for pool and psuedoreplicates and update tagAlign with single end data
experiment_id = design_df.at[0, 'experiment_id']
replicate = design_df.at[0, 'replicate']
design_new_df = design_df #.loc[np.repeat(design_df.index, 4)].reset_index()
design_new_df = design_df.loc[np.repeat(design_df.index, 4)].reset_index()
pool_experiment = design_df.tag_align.unique()
# Update tagAlign with single end data
......@@ -233,7 +233,7 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
pool_pseudoreplicates_dict = {}
for rep, tag_file in zip(design_df['replicate'], design_df['tag_align']):
replicate_prefix = experiment_id + '_' + str(rep)
pool_pseudoreplicates_dict = \
pool_pseudoreplicates_dict[rep] = \
self_psuedoreplication(tag_file, replicate_prefix, paired)
# Update design to include new self pseudo replicates
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment