Commit a79a5aac authored by Venkat Malladi's avatar Venkat Malladi
Browse files

Unit test other functions.

parent bc3cbdee
Pipeline #6308 canceled with stages
in 87 minutes and 51 seconds
......@@ -6,3 +6,26 @@ profile_script="./workflow/scripts/plot_profile.sh"
source ${profile_script}
run check_tools
}
@test "Test deeptools present" {
source ${profile_script}
run check_tools
}
@test "Test deeptools computeMatrix" {
source ${profile_script}
run compute_matrix test_data/ENCSR238SGC_pooled.fc_signal.bw /project/shared/bicf_workflow_ref/mouse/GRCm38/gencode.vM20.annotation.gtf
FILE=computeMatrix.gz
if [[ -f "$FILE" ]]; then
echo "$FILE exist"
fi
}
@test "Test deeptools plotProfile" {
source ${profile_script}
run plot_profile computeMatrix.gz
FILE=plotProfile.png
if [[ -f "$FILE" ]]; then
echo "$FILE exist"
fi
}
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