Resolve "Rename Plot profile to be consistent with naming"

PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated
• README.md is updated

Closes #75 (closed)

changed milestone to %1.1.0

added Test label

changed the description

added 1 commit

• d9e3b2b4 - Update documentation and use GTF file.

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• 8fba6bd9 - Add usage statement.

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• f76f9efd - Update file paths.

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Can we add a bats test to check file size to make sure a blank file is not generated

Also, in the test_plot_profile.py, lets only test for the existence and size of plotprofile not for computematrix.

added 2 commits

• 7df1a370 - Check if file exists and not empty.
• e952181e - Test that size is greater than 0.

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added 1 commit

• 807f5ec0 - Fix spacing.

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added 1 commit

• 0307bd09 - Fix option parsing.

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added 1 commit

• b7eba1f3 - Complicated path

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added 1 commit

• 01e0f56e - Update .gitlab-ci.yml

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added 44 commits

• 01e0f56e...df7ed9bf - 43 commits from branch master
• 54b9865d - Merge branch 'master' into 75-rename_plotprofile

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marked the checklist item If you've fixed a bug or added code that should be tested, add tests! as completed

marked the checklist item Documentation in docs is updated as completed

marked the checklist item README.md is updated as completed

marked the checklist item This comment contains a description of changes (with reason) as completed

changed the description

added 1 commit

• 61db854a - Make gtf taken an option

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